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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
ACC cis rs2273 1 rs9307050 chr4:76905649 NAAA chr4:76831809-76862166:- -0.53 -5.23 3.1E-6 Longevity
ACC cis rs2273 1 rs9995007 chr4:76897791 NAAA chr4:76831809-76862166:- -0.52 -5.3 2.4E-6 Longevity
ACC trans rs9810890 1 rs114329538 chr3:128558387 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs114441742 chr3:128547271 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs115201118 chr3:128552140 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs115221473 chr3:128547136 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs115356727 chr3:128558380 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs115639732 chr3:128555607 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs116479497 chr3:128545382 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs116835720 chr3:128547280 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs10867921 1 rs1910264 chr9:85605777 TFDP3 chrX:132350697-132352376:- 0.91 9.81 1.99E-13 Obesity-related traits
ACC trans rs3213787 1 rs3770264 chr2:45683516 GAGE2D chrX:49197563-49223943:+;chrX 0.66 7.92 1.68E-10 Glaucoma
ACC trans rs9810890 1 rs73198886 chr3:128546420 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs73198887 chr3:128546426 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries
ACC trans rs9810890 1 rs73198889 chr3:128547620 OR5V1 chr6:29323008-29324054:- 0.68 8.83 6.4E-12 Dental caries